Study of Life
                                           Basic Themes
I. Introduction
   A. define:   Biology = ?????
       1. "bio" refers to "life"
       2. "ology" refers to "the study of"
   B. define:  Life =  ?????
   C. define:  Hierarchy = ?????
        1. examples of hierarchy outside of biology
             a-
             b-
             c-
        2. examples of hierarchy within biology
             a-
             b-
             c-
   D. Themes in Biology
        1. Life can be organized into hierarchial levels
            a. atoms
            b. molecules 
            c. supramolecular structures
                 -eg:
                 -eg: 
            d. cells
                -lowest level of organization with all 
                 properties of life
            e. tissues
                -found in some multicellular organisms
                -similar cells with specialized functions
                -do not display all properties of life
            f.  organs
                -found in some multicellular organisms
                -associations of several tissues with an 
                  overall specialized function
                -do not display all properties of life
            g. organisms
                -next level with all properties of life
                -one or more cells which function together as 
                  a reproductive unit
            h. populations of organisms
            i.  communities of different organisms
            j.  biosphere = totality of all organisms on earth
                 -some biologists (eg: L. Margulis consider 
                   populations, communities and even the 
                   biosphere, to be "alive")
            k.  theme of organization through cells 
                 will be emphasized in 241
        2.  Life displays emergent properties
           a. define:  emergent properties = ?????
                 - eg: molecules have properties different from 
                           isolated atoms
                           - 6 carbon atoms, 6 oxygen atoms and
                             12 hydrogen atoms mixed together have
                              very different properties than 1 glucose 
                              molecule
                 - eg: supramolecular structures have properties 
                           different from molecules
                  -eg: cells have many properties that go 
                          beyond the properties of molecules
                          -eg: ____________________
                          -eg: ____________________
                          -eg: ____________________
                  -eg: organisms have properties that go beyond the 
                          properties of cells
                          -eg: ____________________
                          -eg: ____________________
                          -eg: ____________________
           b. be able to list emergent properties for each of
               the hierarchial levels
           c. theme of emergent properties will be
               emphasized in 241
        3. "Cells are lowest level of organization which CAN
             display all properties unique to life"
           a. important statement => courses based solely on cells
               -at WSU----Cell Biology 308
           b. why the "can" in the statement above?
                -???????
           c. original cell theory  = all organisms are composed 
               of one or more cells
               -Schleiden and Schwann (1839)
           d. current cell theory = all organisms are composed of 
               one or more cells and all cells come from 
               pre-existing cells
           e. properties of all cells
               -surrounded by a plasma membrane (PM)
                    -PM regulates contents of cell
                    -PM maintains condition of low entropy
               -have cytoplasm within the plasma membrane
                    -dissolved macromolecules and small molecules
               -have genetic information
                     -deoxyribonucleic acid  (DNA)
               -divide to form new cells
               -be able to list the properties above
             f. theme of cells as the lowest level
                organization which has all properties 
                of life is emphasized in 241
        4. Continuity of life requires that information 
             be heritable (Genetics)
               a) offspring are similar to parents
                      -similarity is due to heritable information
               b) DNA contains the heritable information
                      -information present in sequence of bases
               c)  when cells divide, each daughter cell gets 
                   exact copies of DNA molecules, and thus, gets 
                   exact copies of the heritable information
                d) theme of genetics emphasized in 241
        5. Structures are related to Functions
              -wings:flight
              -legs:running
              -enzymes:catalyzed reactions
              -membranes:lowered entropy
              -etc
              -theme of structure/function emphasized in 241 
        6. Organisms are "open" and must interact with 
            their environment
              -define "open" = ?????
              -define "environment" = ?????
              -theme of "openness" emphasized in 242
        7. Organisms regulate their various processes 
            and activities
               a. eg: hot day, you _____________
               b. eg: body needs energy, you ___________
               c. eg: during sleep your metabolism ________
               d. theme of regulation emphasized
                    in 242
        8. Life displays great Diversity
               a. biologists have identified and named 1.5 million species
                     -260,000 plants
                     -50,000 vertebrates
                     -750,000 insects!
                     -fungi?????
                     -prokaryotic organisms?????
                     -protistans??????
                b. biologists estimate that there may be 5 million
                    to 100 million species on earth
                c. biologists group similar organisms together
                      -cats: lions, tigers, leopards, house cats
                 d. Taxonomy= branch of biology which names 
                     and classifies species and groups into a 
                     formal scheme
                      -5 kingdoms
                            1. ????????
                                -eukaryotic autotrophs
                            2. ????????
                                -all prokaryotic organisms
                                -many biologists favor two kingdoms
                                     -bacteria (formerly the eubacteria)
                                     -archaea (formerly the archaebacteria)
                            3. ????????
                                -unicellular eukaryotes
                                -a few simple multicellular eukaryotes
                                -many biologists favor multiple 
                                  kingdoms within protista
                            4. ????????
                                -multicellular, eukaryotic heterotrophs 
                                  with extracellular digestion
                            5. ????????
                                -multicellular, eukaryotic heterotrophs 
                                  which ingest other organisms
                  e. theme of "Diversity" emphasized in 242
        9. Unity of life
                a.  this is a major focus of this class
                b.  emphasize the similarity of all living things
                c. how are all living things similar?
                    - all life has genetic information in the 
                         form of DNA
                    - all life is cellular
                    - all life uses proteins to catalyze its 
                         various processes
                    - great unity in the basic life processes
                 d. theme of "Unity" emphasized in 241
        10. Evolution
               a. "The history of life is a chronicle 
                   of a restless Earth, billions of years old, 
                   inhabited by a changing cast of living forms."
                b. life changes
                c. similar species have common ancesters
                      -eg: horses and zebras are very similar,
                        both descended from a common ancester
                       -eg: domestic cats and lions are very similar,
                         both descended from a common ancester
                       -go back far enough, and all life came from 
                         an orginal prokaryotic organism
                d. Charles Darwin was one of the most influential 
                     scientists in developing modern biology
                        -a great naturalist
                        -made two key observations:
                             1. Individuals within a population of a 
                                 given species vary in many heritable traits.
                              2. A population of a species has the potential 
                                  of producing more offspring than the 
                                  environment can support with food, space 
                                  and other resources.  This overproduction 
                                  of offspring forces the offspring to compete
                                  for the limited resources necessary for 
                                  survival and reproduction.
                        -Darwin made an important inference 
                          based on the observations
                               -Those individuals with heritable traits best
                                 suited to the local environment tend to be
                                 more successful at surviving and reproducing
                                 than are those individuals with heritable traits 
                                 which are not as well suited to the local
                                 environment.  This leads to differential
                                 reproduction.  Darwin called differential
                                 reproduction natural selection.
                               -Darwin proposed that natural selection could
                                 produce new species, given enough time.
                e. much of biology today is focused on documenting 
                    natural selection and practicing artificial selection

                 f. theme of "Evolution" emphasized
                    in 241 and 242 and most other 
                    biology courses 
        11 Science is a process
                a. science is a "way of knowing"
                b. biology is the "science of life"
                c. biology answers questions relating to life
                d. biology uses scientific method to answer questions
                        -science only deals with topics which can 
                          illucidated with experiments or observation
                        -scientific method has series of steps
StepDescriptionExample
General ObservationAny aspect of life is observedFlies were once killed by DDT but now they are no longer killed.
General QuestionBroad question relating to the general observation.Why does DDT no longer kill the flies?
Testable HypothesisHypothesis = answer to general question which can be tested with an experiment. What if a hypothesis can't be tested?????DDT does not kill flies because now flies can metabolize DDT and render DDT nontoxic.
Test the hypothesis with an experimentExperiment designed to test the hypothesis.If the hypothesis is true, then we should be able to measure the abilitiy of the flies to metabolize DDT, converting DDT to a nontoxic form.
Experimental ResultsCollect the results of the experiment.One possible result is that we find that DDT resistant flies DO NOT metabolize DDT and do not make the DDT nontoxic.
Analysis and ConclusionsAnalyze the data collected and draw conclusions.In this case we conclude that hypothesis is not supported.
Consider hypothesisTentatively accept supported hypotheses and reject unsupported hypothesesReject original hypothesis
New testable hypothesisDevelop a new testable hypothesisDDT resistant flies do not allow DDT to enter their bodies
Test the new testable hypothesisDevise experiment to test the new hypothesisMeasure whether or not DDT can enter cells of flies using radioactive DDT
Continue process until understanding is complete

   E. Reznick and Endler Experiments
        1. carefully read pp 15-17 in Campbell et al. and become
            thoroughly familiar with the Reznick and
            Endler experiments
         2. be prepared to do the following:
                a. cite the Hypothesis #1/Experiment/Predicted
                     Result/Result as detailed in the text 
                b. cite the Hypothesis #2/Experiment/Predicted
                     Result/Result as detailed in the text
                 c. cite the most likely explanation (according 
                     to Reznick and Endler) for the observed
                     differences in guppy populations
                 d. relate the Reznick and Endler experiments 
                      to the theory of evolution by natural selection
    F. Theories = broadly applicable generalizations that
         explain many observations and facts
           1. to be accepted, theories must be supported
               by a large body of evidence
            2. evolution by natural selection is a theory 
                widely supported by all branches of biology
                   a. there is essentially no uncertainty in the 
                       scientific community about the theory 
                       of evolution
                   b. see Gould's article in Time, August 23, 1999 
                         -nicely summarizes the attitude of most biologists    
                                          


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Define: Biology = the study of life

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Define: Life = a set of energy driven, self replicating, 
                       changeable, chemical reactions

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Define: Hierarchy = arrangement into a graded series

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Emergent properties of cells:  reproduction, metabolism, use of energy, simple movement, LIFE

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Emergent properties of organisms = thinking, complex movement, vision, hearing, 

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"Open" in this context means that 
organisms need a continuous supply of energy to 
keep functioning.  The major source of energy input 
for most animals and plants on earth is light energy 
from the sun.

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Environment  of an organism = the sum total 
of the physical and biological surroundings of an organism.


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emergent properties = unique characteristics associated with a level of organization which are not found in the levels below

emergent properties arise from the "organization" of the lower levels

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Not all cells DO display all of the properties of life. Eg: mammalian red blood cells do not reproduce.

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